Reactive oxygen species biosynthetic process

Across TCGA cell cohorts, RNA activity of the Reactive oxygen species biosynthetic process pathway is significantly associated with the RNA expression of multiple genes, with the LUNG_NSCLC_LUAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are SOD2, SOD1, and TGM5, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Reactive oxygen species biosynthetic process activity versus SOD2 in LUNG_NSCLC_LUAD (Pearson r = 0.32).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUNG_NSCLC_LUAD	SOD2 →	+0.769	+0.551	.007	.006	2	7
BLOOD_Leukemia	SOD1 →	+1.216	+0.821	<.001	<.001	3	5
BLOOD_Leukemia	TGM5 →	-1.241	-0.591	.008	.001	3	4
BREAST	ZNF706 →	+0.465	+0.234	.005	.002	3	4
BLOOD_Leukemia	FRY →	-2.079	-0.720	.001	.009	3	3
LARGE_INTESTINE	DGAT1 →	+1.336	+0.702	<.001	.007	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:1903409 vs SOD2 — LUNG_NSCLC_LUAD

Explore this scatter interactively →