Regulation of high voltage-gated calcium channel activity

pathway activity — cross-omics
GO:1901841Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Regulation of high voltage-gated calcium channel activity pathway is significantly associated with the protein abundance of multiple proteins, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are ADD2, SLFN11, and CACNA2D1, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
HNSCADD2 →+0.338+0.041.003.00936
BRCASLFN11 →+0.349+0.062.001.00135
HNSCCACNA2D1 →+0.579+0.066<.001<.00135
CCRCCQKI →+0.186+0.079<.001<.00135
BRCACEP170 →+0.346+0.067<.001<.00135
HNSCGNPNAT1 →-0.378-0.077<.001<.00135
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration