Regulation of high voltage-gated calcium channel activity

pathway activity — cross-omics
GO:1901841Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Regulation of high voltage-gated calcium channel activity pathway is significantly associated with the RNA expression of multiple genes, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TENM3, SOHLH2, and TCEAL4, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
HNSCTENM3 →+0.754+0.137.003.00634
PDACSOHLH2 →+0.153+0.100.001.00433
PDACTCEAL4 →+0.284+0.160.003<.00133
PDACTHY1 →+0.473+0.114<.001.00333
PDACMAPK11 →+0.391+0.082<.001.00633
PDACTSPAN4 →+0.429+0.151<.001<.00133
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration