Regulation of synaptic vesicle membrane organization

Across TCGA patient cohorts, RNA activity of the Regulation of synaptic vesicle membrane organization pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CHGA, HMGN2P15, and ABCC8, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of synaptic vesicle membrane organization activity versus CHGA in GBM (Pearson r = 0.68).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	CHGA →	+2.368	+1.112	<.001	<.001	3	5
COAD	HMGN2P15 →	+0.704	+0.227	.001	<.001	3	4
GBM	ABCC8 →	+1.054	+1.050	<.001	<.001	3	4
GBM	PDE1A →	+0.801	+0.841	<.001	<.001	3	4
LSCC	NEB →	-0.501	-0.302	.006	.004	3	4
LSCC	MIR497HG →	+0.124	+0.277	.003	.005	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:1901632 vs CHGA — GBM

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