Regulation of DNA demethylation

pathway activity — cross-omics
GO:1901535Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Regulation of DNA demethylation pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are BRMS1L_S197, RFC1, and TET2_S99, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMBRMS1L_S197 →+0.410+0.059.001.00336
LSCCRFC1 →+0.280+0.061.002<.00135
LSCCTET2_S99 →+0.486+0.041<.001<.00135
LSCCDIAPH3_S1093 →+0.943+0.042<.001.00435
GBMMAD2L1 →+0.539+0.073<.001.00235
GBMKDM1A →+0.274+0.066.002<.00135
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration