Regulation of calcium ion transmembrane transporter activity

pathway activity — cross-omics
GO:1901019Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Regulation of calcium ion transmembrane transporter activity pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CDC25A, CHAF1A, and CALCRL, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OVCDC25A →-0.777-0.963<.001<.00135
LUADCHAF1A →-0.569-0.969<.001<.00135
BRCACALCRL →+0.877+0.949<.001.00335
BRCADCN →+1.236+0.826<.001<.00135
BRCADIAPH3 →-0.755-1.087.002.00135
BRCANEXN →+0.930+0.780<.001.00235
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration