Negative regulation of cellular response to oxidative stress

pathway activity — cross-omics
GO:1900408Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Negative regulation of cellular response to oxidative stress pathway is significantly associated with the RNA expression of multiple genes, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are XKR8, MIR29B2CHG, and IPCEF1, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
HNSCXKR8 →+0.296+0.514.004.00434
LSCCMIR29B2CHG →+0.457+0.511<.001.00134
GBMIPCEF1 →+0.590+0.629<.001<.00134
GBMKIAA0513 →+0.728+0.698<.001<.00134
LUADHLA-DMA →+0.675+0.542<.001.00134
LUADRPS29P11 →+1.489+0.720<.001<.00134
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration