Regulation of DNA-directed DNA polymerase activity

pathway activity — cross-omics
GO:1900262Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Regulation of DNA-directed DNA polymerase activity pathway is significantly associated with the RNA expression of multiple genes, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CENPO, CCDC138, and MTBP, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
HNSCCENPO →+0.747+0.226<.001<.00137
HNSCCCDC138 →+0.619+0.219<.001<.00137
BRCAMTBP →+0.599+0.240.003<.00137
BRCACSNK2B →+0.331+0.148<.001<.00137
HNSCKNTC1 →+0.596+0.222.001<.00137
HNSCMCM6 →+0.758+0.210.004<.00137
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration