Obsolete regulation of nodal signaling pathway involved in determination of left/right asymmetry

pathway activity — cross-omics
GO:1900145Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete regulation of nodal signaling pathway involved in determination of left/right asymmetry pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TSPAN8, NDUFB11, and SAA4, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OVTSPAN8 →-4.421-0.409.003<.00132
OVNDUFB11 →-0.876-0.368<.001<.00132
OVSAA4 →-0.540-0.368<.001<.00132
OVRNA5SP367 →+1.223+0.323.002.00132
OVSLC25A5 →-1.044-0.387.008<.00132
UCECU2SURP →+0.755+0.886.001.00332
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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