Extracellular regulation of signal transduction

pathway activity — cross-omics
GO:1900115Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Extracellular regulation of signal transduction pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are EMILIN1, TAGLN, and AEBP1, each associated with the pathway in up to 10 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMEMILIN1 →+0.534+0.105<.001<.001310
GBMTAGLN →+0.841+0.099<.001<.00139
BRCAAEBP1 →+0.857+0.050<.001<.00139
GBMCOL1A2 →+0.864+0.086<.001<.00139
GBMCOL3A1 →+0.846+0.092<.001<.00139
GBMCOL5A2 →+0.756+0.105<.001<.00139
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration