Cellular lipid biosynthetic process

pathway activity — cross-omics
GO:0097384Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Cellular lipid biosynthetic process pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are NAA50, PLA2G4A, and SPTBN1, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMNAA50 →-0.182-0.048<.001.00136
COADPLA2G4A →+0.500+0.031<.001<.00135
LUADSPTBN1 →+0.248+0.052<.001<.00135
PDACTBX2_S360 →+0.552+0.049.002<.00126
BRCANID1 →+0.439+0.027<.001.00435
BRCAPDE3A →+0.492+0.035.003.00135
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration