Hematopoietic stem cell migration to bone marrow

Across TCGA patient cohorts, RNA activity of the Hematopoietic stem cell migration to bone marrow pathway is significantly associated with the protein abundance of multiple proteins, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are SGCD, HSPA12B_S434, and CYGB, each associated with the pathway in up to 10 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Hematopoietic stem cell migration to bone marrow activity versus SGCD in OV (Pearson r = 0.37).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	SGCD →	+0.784	+0.039	<.001	.004	3	10
OV	HSPA12B_S434 →	+1.094	+0.037	.001	.009	3	10
CCRCC	CYGB →	+0.540	+0.084	<.001	<.001	3	9
UCEC	RSU1 →	+0.456	+0.076	<.001	<.001	3	9
OV	SNX18 →	+0.592	+0.040	.001	.004	3	9
BRCA	SRPX →	+0.692	+0.068	<.001	<.001	3	9

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0097241 vs SGCD — OV

Explore this scatter interactively →