Obsolete negative regulation of transcription from RNA polymerase II promoter in response to stress

pathway activity — cross-omics
GO:0097201Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete negative regulation of transcription from RNA polymerase II promoter in response to stress pathway is significantly associated with the protein abundance of multiple proteins, with the CCRCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are LMOD1_S85, MYLK, and AOC3, each associated with the pathway in up to 9 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
CCRCCLMOD1_S85 →+0.700+0.038<.001<.00139
OVMYLK →+0.429+0.047<.001<.00139
OVAOC3 →+0.664+0.068<.001<.00138
LSCCSRPK1 →-0.346-0.050<.001.00137
OVSERBP1 →-0.288-0.059.003.00337
OVSRRM2_S1112 →-0.797-0.073<.001<.00137
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration