Obsolete negative regulation of transcription from RNA polymerase II promoter in response to stress

pathway activity — cross-omics
GO:0097201Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete negative regulation of transcription from RNA polymerase II promoter in response to stress pathway is significantly associated with the RNA expression of multiple genes, with the COAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are C2CD3, BAG3, and CMC1, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
COADC2CD3 →-0.382-0.698.008.00134
BRCABAG3 →+0.625+0.465<.001.00534
BRCACMC1 →-0.277-0.685.001<.00134
COADSHOC2 →+0.335+0.757.001<.00133
GBMLDB3 →+0.843+0.283<.001<.00133
GBMPLP1 →+2.348+0.400<.001<.00133
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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