Microglial cell mediated cytotoxicity

pathway activity — cross-omics
GO:0090634Cross-omicsRNA → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Microglial cell mediated cytotoxicity pathway is significantly associated with the RNA expression of multiple genes, with the SARC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TYROBP, HAVCR2, and MYO1F, each associated with the pathway in up to 33 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
SARCTYROBP →+2.297+0.155<.001<.001333
SARCHAVCR2 →+2.046+0.162<.001<.001333
SCLCMYO1F →+1.799+1.026<.001<.001333
BLCAFCER1G →+2.364+0.120<.001<.001333
LAMLLY86 →+2.165+0.141<.001<.001332
LAMLNCF2 →+2.203+0.155<.001<.001332
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration