Establishment of protein localization to endoplasmic reticulum

Across TCGA patient cohorts, RNA activity of the Establishment of protein localization to endoplasmic reticulum pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are COL18A1, CYGB, and CCN2, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Establishment of protein localization to endoplasmic reticulum activity versus COL18A1 in GBM (Pearson r = 0.23).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	COL18A1 →	+0.449	+0.043	.007	.004	3	5
OV	CYGB →	+0.528	+0.043	.007	.002	2	6
OV	CCN2 →	+0.607	+0.027	<.001	.005	3	5
OV	DOCK2 →	+0.417	+0.040	.003	.002	3	5
GBM	FRZB →	+0.606	+0.044	.007	.003	3	5
OV	PDLIM3 →	+0.596	+0.042	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0072599 vs COL18A1 — GBM

Explore this scatter interactively →