Regulation of podosome assembly

Across TCGA patient cohorts, RNA activity of the Regulation of podosome assembly pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are SKAP2, APOBR, and MYO1F, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of podosome assembly activity versus SKAP2 in GBM (Pearson r = 0.47).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	SKAP2 →	+0.602	+0.085	<.001	<.001	3	6
GBM	APOBR →	+0.443	+0.066	<.001	<.001	3	6
GBM	MYO1F →	+0.577	+0.100	<.001	<.001	3	6
GBM	NCF2 →	+0.572	+0.070	<.001	<.001	3	6
CCRCC	NCF4 →	+0.551	+0.061	<.001	<.001	3	6
GBM	RIN3 →	+0.341	+0.064	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0071801 vs SKAP2 — GBM

Explore this scatter interactively →