Obsolete ER-associated misfolded protein catabolic process

pathway activity — cross-omics
GO:0071712Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete ER-associated misfolded protein catabolic process pathway is significantly associated with the protein abundance of multiple proteins, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are PPM1F, ESRP2_S573, and ESS2, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCAPPM1F →+0.182+0.028.005.00736
LUADESRP2_S573 →-0.393-0.037<.001<.00136
GBMESS2 →+0.220+0.038<.001<.00135
UCECMMP2 →+0.738+0.042<.001.00135
OVDSP_S22 →-0.581-0.040<.001<.00135
OVERBB3 →-0.461-0.041.001<.00135
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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