Maintenance of protein location in extracellular region

pathway activity — cross-omics
GO:0071694Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Maintenance of protein location in extracellular region pathway is significantly associated with the protein abundance of multiple proteins, with the CCRCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are TPM4, ACTN1, and LMCD1, each associated with the pathway in up to 9 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
CCRCCTPM4 →+0.375+0.098<.001<.00139
UCECACTN1 →+0.625+0.207<.001<.00139
CCRCCLMCD1 →+0.534+0.109<.001<.00139
GBMASPN →+0.908+0.096<.001.00139
CCRCCSFRP4 →+1.392+0.135<.001<.00139
UCECTIMP2 →+0.654+0.189<.001<.00139
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration