Cellular response to biotic stimulus

Across TCGA patient cohorts, RNA activity of the Cellular response to biotic stimulus pathway is significantly associated with the protein abundance of multiple proteins, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are RCSD1, RCSD1_S351, and ARRB2, each associated with the pathway in up to 10 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Cellular response to biotic stimulus activity versus RCSD1 in OV (Pearson r = 0.46).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	RCSD1 →	+0.749	+0.047	<.001	<.001	3	10
OV	RCSD1_S351 →	+0.782	+0.041	<.001	<.001	3	10
HNSC	ARRB2 →	+0.365	+0.067	<.001	<.001	3	10
GBM	SAMSN1_S107 →	+0.874	+0.087	<.001	<.001	3	10
LSCC	SAMSN1_S23 →	+0.825	+0.084	<.001	<.001	3	10
GBM	SASH3 →	+0.595	+0.077	<.001	<.001	3	10

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0071216 vs RCSD1 — OV

Explore this scatter interactively →