Positive regulation of glycogen metabolic process

Across TCGA patient cohorts, RNA activity of the Positive regulation of glycogen metabolic process pathway is significantly associated with the RNA expression of multiple genes, with the LUAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are IRS2, LMOD1, and APBB1, each associated with the pathway in up to 9 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Positive regulation of glycogen metabolic process activity versus IRS2 in LUAD (Pearson r = 0.50).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUAD	IRS2 →	+1.272	+1.111	<.001	<.001	3	9
UCEC	LMOD1 →	+1.877	+1.162	<.001	<.001	3	6
UCEC	APBB1 →	+0.640	+0.696	.004	.002	3	6
GBM	SCG2 →	+0.871	+0.530	.008	.002	3	6
PDAC	COPZ2 →	+0.694	+0.863	<.001	.001	3	6
HNSC	FERMT2 →	+0.898	+0.377	<.001	.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0070875 vs IRS2 — LUAD

Explore this scatter interactively →