Regulation of glycogen metabolic process

Across TCGA patient cohorts, RNA activity of the Regulation of glycogen metabolic process pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are SH3BP1, PTPN2, and UQCC1, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of glycogen metabolic process activity versus SH3BP1 in GBM (Pearson r = -0.25).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	SH3BP1 →	-0.214	-0.038	.005	.002	3	6
LSCC	PTPN2 →	-0.162	-0.024	.002	.005	3	6
COAD	UQCC1 →	+0.366	+0.032	<.001	<.001	3	5
OV	VCAN →	+0.966	+0.042	<.001	<.001	3	5
BRCA	FARP1 →	+0.406	+0.045	<.001	<.001	3	5
BRCA	GBP1 →	-0.635	-0.046	.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0070873 vs SH3BP1 — GBM

Explore this scatter interactively →