Regulation of neuron projection regeneration

Across TCGA patient cohorts, RNA activity of the Regulation of neuron projection regeneration pathway is significantly associated with the protein abundance of multiple proteins, with the UCEC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are PPM1F, CNPY4, and AIMP1, each associated with the pathway in up to 8 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of neuron projection regeneration activity versus PPM1F in UCEC (Pearson r = 0.24).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	PPM1F →	+0.289	+0.083	.002	<.001	3	8
OV	CNPY4 →	+0.388	+0.057	.001	<.001	3	8
OV	AIMP1 →	-0.246	-0.067	.001	<.001	3	8
CCRCC	RPL5 →	-0.196	-0.055	<.001	<.001	3	7
BRCA	TPM1 →	+0.310	+0.028	.007	<.001	3	7
BRCA	COLEC12 →	+0.593	+0.035	.001	<.001	3	7

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0070570 vs PPM1F — UCEC

Explore this scatter interactively →