Positive regulation of stress-activated protein kinase signaling cascade

pathway activity — cross-omics
GO:0070304Cross-omicsPROTEIN-MS → RNACellPairwise association · TCGA cohorts

Across TCGA cell cohorts, RNA activity of the Positive regulation of stress-activated protein kinase signaling cascade pathway is significantly associated with the RNA expression of multiple genes, with the SOFT_TISSUE cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are SCARB2, POLR2H, and EIF2AK4, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Positive regulation of stress-activated protein kinase signaling cascade activity versus SCARB2 in SOFT_TISSUE (Pearson r = 0.32).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
SOFT_TISSUESCARB2 →+0.684+0.360.009.00234
BLOOD_MyelomaPOLR2H →+0.820+0.266.004.00934
BLOOD_LymphomaEIF2AK4 →+1.468+0.238.007.00834
BLOOD_LymphomaSLC25A43 →+1.323+0.243.003.00133
BLOOD_LymphomaCPOX →+1.337+0.214.004.00133
BLOOD_LeukemiaMTAP →+1.527+0.149.007.00724
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0070304 vs SCARB2 — SOFT_TISSUE

Per-sample scatter of Positive regulation of stress-activated protein kinase signaling cascade activity vs SCARB2 in SOFT_TISSUE.

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Exploration