Negative regulation of thymocyte apoptotic process

Across TCGA patient cohorts, RNA activity of the Negative regulation of thymocyte apoptotic process pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are RPL9P21, BUD31P2, and MAFTRR, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Negative regulation of thymocyte apoptotic process activity versus RPL9P21 in GBM (Pearson r = -0.28).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	RPL9P21 →	+0.233	+0.527	.003	.007	3	3
COAD	BUD31P2 →	+0.387	+0.340	<.001	<.001	3	3
UCEC	MAFTRR →	+0.461	+0.726	.004	<.001	3	3
BRCA	PTTG3P →	+0.691	+0.377	.003	.003	3	3
OV	LINC02269 →	+0.191	+0.566	.005	.001	3	3
LSCC	SNTG2-AS1 →	+0.722	+0.596	.001	.009	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0070244 vs RPL9P21 — GBM

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