Lymphocyte apoptotic process

Across TCGA patient cohorts, RNA activity of the Lymphocyte apoptotic process pathway is significantly associated with the protein abundance of multiple proteins, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are RCSD1, SASH3, and SEPTIN1, each associated with the pathway in up to 10 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Lymphocyte apoptotic process activity versus RCSD1 in HNSC (Pearson r = -0.04).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
HNSC	RCSD1 →	+0.588	+0.064	<.001	<.001	3	10
GBM	SASH3 →	+0.530	+0.066	<.001	<.001	3	10
HNSC	SEPTIN1 →	+0.963	+0.062	<.001	.001	3	10
GBM	SKAP2 →	+0.791	+0.065	<.001	<.001	3	10
GBM	STK10 →	+0.430	+0.047	<.001	<.001	3	10
GBM	WAS →	+0.744	+0.072	<.001	<.001	3	10

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0070227 vs RCSD1 — HNSC

Explore this scatter interactively →