Articular cartilage development

pathway activity — cross-omics
GO:0061975Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Articular cartilage development pathway is significantly associated with the RNA expression of multiple genes, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are NEURL3, PBXIP1, and FEN1, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCNEURL3 →-0.649-0.121<.001.00335
LUADPBXIP1 →+0.582+0.127.001.00234
LUADFEN1 →-0.650-0.125<.001<.00134
LUADRCAN2 →+0.631+0.111<.001<.00134
GBMDEPDC1B →-0.785-0.180<.001<.00134
UCECCCNA2 →-1.050-0.105<.001.00434
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration