Wnt protein secretion

pathway activity — cross-omics
GO:0061355Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Wnt protein secretion pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are IGFBP3, TESC, and FLI1, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OVIGFBP3 →+0.967+0.137.002.00833
PDACTESC →+0.943+0.405.001.00933
LUADFLI1 →-0.372-0.630.004.00233
HNSCBTBD6P1 →-0.541-0.187.007.00933
OVF12 →+0.567+0.146<.001.00133
LSCCMYOZ1 →-0.385-0.229<.001.00133
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration