Lung secretory cell differentiation

pathway activity — cross-omics
GO:0061140Cross-omicsRNA → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Lung secretory cell differentiation pathway is significantly associated with the RNA expression of multiple genes, with the TGCT cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are NFIB, HOXA5, and SPATA6, each associated with the pathway in up to 24 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
TGCTNFIB →+1.486+0.076<.001<.001324
LAMLHOXA5 →+2.021+0.144<.001<.001322
LAMLSPATA6 →+1.100+0.146<.001<.001319
ESCAMFSD4A →+1.255+0.092<.001<.001318
ESCAMAGI1 →+0.676+0.106<.001<.001317
LAMLHOXA6 →+1.778+0.138<.001<.001317
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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