Lung secretory cell differentiation

pathway activity — cross-omics
GO:0061140Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Lung secretory cell differentiation pathway is significantly associated with the protein abundance of multiple proteins, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are AGR2, MRC2, and PPP1R12A, each associated with the pathway in up to 8 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCAAGR2 →+1.448+0.091<.001<.00138
COADMRC2 →-0.554-0.077<.001<.00136
COADPPP1R12A →-0.310-0.061<.001<.00136
OVPPP1R18 →-0.376-0.062<.001.00236
LSCCTJP3_S203 →+0.684+0.060.003.00436
COADTLN1 →-0.393-0.070<.001<.00136
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration