Lung secretory cell differentiation

pathway activity — cross-omics
GO:0061140Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Lung secretory cell differentiation pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are NFIB, CWF19L2, and NUP160, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMNFIB →+1.140+0.376<.001<.00136
GBMCWF19L2 →+0.351+0.280<.001.00835
BRCANUP160 →+0.577+0.150.001.00135
GBMRLF →+0.422+0.462.001.00134
BRCASMU1 →+0.334+0.114<.001.00634
BRCANUP54 →+0.430+0.148.003.00234
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration