Chaperone-mediated protein folding

pathway activity — cross-omics
GO:0061077Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Chaperone-mediated protein folding pathway is significantly associated with the RNA expression of multiple genes, with the PDAC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are GPA33, RMDN2, and CCDC12, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
PDACGPA33 →-0.855-0.115.005.00134
LUADRMDN2 →-0.671-0.169<.001<.00134
BRCACCDC12 →-0.429-0.182.008.00534
UCECBMP7 →-1.283-0.170<.001.00133
UCECLDAH →-1.070-0.180<.001.00933
UCECMACIR →-0.711-0.185<.001.00133
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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