Blood vessel endothelial cell differentiation

Across TCGA patient cohorts, RNA activity of the Blood vessel endothelial cell differentiation pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TRIM16L, RNU6-1093P, and CCDC88B, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Blood vessel endothelial cell differentiation activity versus TRIM16L in BRCA (Pearson r = -0.16).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	TRIM16L →	-0.553	-0.456	.002	.001	3	3
BRCA	RNU6-1093P →	+0.150	+0.744	.003	<.001	3	3
COAD	CCDC88B →	+0.585	+0.473	.005	.001	3	3
COAD	LIME1 →	+0.487	+0.548	.002	.001	3	3
PDAC	RN7SL105P →	+0.537	+0.473	<.001	.003	3	3
CCRCC	PER1 →	-0.820	-0.390	.001	.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0060837 vs TRIM16L — BRCA

Explore this scatter interactively →