Epithelial-mesenchymal cell signaling

pathway activity — cross-omics
GO:0060684Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Epithelial-mesenchymal cell signaling pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are CYRIB, MCMBP, and TNFAIP8, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMCYRIB →-0.241-0.118<.001<.00137
BRCAMCMBP →-0.355-0.107<.001<.00137
GBMTNFAIP8 →-0.622-0.148.002.00336
UCECARRB2 →-0.295-0.098.002.00136
BRCACYGB →+0.567+0.088<.001<.00136
GBMCYTH4 →-0.481-0.147<.001<.00136
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration