Epithelial-mesenchymal cell signaling

pathway activity — cross-omics
GO:0060684Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Epithelial-mesenchymal cell signaling pathway is significantly associated with the RNA expression of multiple genes, with the UCEC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TTC6, SLC25A21, and MIPOL1, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECTTC6 →+1.820+0.506<.001<.00136
LUADSLC25A21 →+0.586+0.490.008.00135
LSCCMIPOL1 →+0.725+0.682<.001<.00134
BRCASLC25A21-AS1 →+0.688+0.681<.001<.00134
BRCAFOXA1 →+3.257+0.648<.001<.00125
BRCAARFGEF3 →+1.110+0.551.003.00234
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration