Neuroepithelial cell differentiation

Across TCGA patient cohorts, RNA activity of the Neuroepithelial cell differentiation pathway is significantly associated with the RNA expression of multiple genes, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are MAP1B, GPR161, and ST6GAL2, each associated with the pathway in up to 10 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Neuroepithelial cell differentiation activity versus MAP1B in LSCC (Pearson r = 0.83).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	MAP1B →	+2.117	+1.232	<.001	<.001	3	10
HNSC	GPR161 →	+0.837	+0.886	.002	<.001	3	7
LSCC	ST6GAL2 →	+1.368	+1.039	<.001	<.001	3	7
LSCC	MPP3 →	+1.169	+1.000	<.001	<.001	3	7
LSCC	MIR4803 →	+1.851	+1.042	<.001	<.001	3	7
OV	JCAD →	+0.901	+0.980	.002	<.001	3	7

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0060563 vs MAP1B — LSCC

Explore this scatter interactively →