Skeletal muscle organ development

Across TCGA patient cohorts, RNA activity of the Skeletal muscle organ development pathway is significantly associated with the RNA expression of multiple genes, with the COAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CNRIP1, IGFBP7, and LINC02408, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Skeletal muscle organ development activity versus CNRIP1 in COAD (Pearson r = 0.31).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
COAD	CNRIP1 →	+0.449	+0.248	.003	.002	3	3
COAD	IGFBP7 →	+0.550	+0.256	.003	.004	3	3
COAD	LINC02408 →	+0.294	+0.179	.002	.004	3	3
COAD	ANKRD65 →	+0.603	+0.378	<.001	<.001	3	3
BRCA	PMP22 →	+1.351	+0.277	.001	.001	3	3
BRCA	LRCH2 →	+0.798	+0.238	.001	.007	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0060538 vs CNRIP1 — COAD

Explore this scatter interactively →