Retinal bipolar neuron differentiation

pathway activity — cross-omics
GO:0060040Cross-omicsRNA → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Retinal bipolar neuron differentiation pathway is significantly associated with the RNA expression of multiple genes, with the DLBC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are PRDM1, ZHX2, and ITPRIP, each associated with the pathway in up to 24 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
DLBCPRDM1 →+1.732+0.118<.001<.001324
TGCTZHX2 →+1.437+0.140<.001<.001323
PCPGITPRIP →+0.842+0.040<.001<.001321
DLBCZFP36 →+1.295+0.102.001.008122
SCLCKLHL6 →+1.450+0.787<.001<.001320
SCLCSTK17B →+0.962+0.641<.001.007122
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration