Alditol phosphate metabolic process

Across TCGA patient cohorts, RNA activity of the Alditol phosphate metabolic process pathway is significantly associated with the protein abundance of multiple proteins, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are VIRMA, XPO1, and GPD1, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Alditol phosphate metabolic process activity versus VIRMA in BRCA (Pearson r = -0.36).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	VIRMA →	-0.194	-0.048	.004	.001	3	5
BRCA	XPO1 →	-0.179	-0.045	<.001	<.001	3	5
BRCA	GPD1 →	+1.289	+0.057	<.001	<.001	3	5
BRCA	ABLIM1 →	+0.542	+0.046	<.001	.001	3	5
OV	ABLIM3 →	+0.953	+0.051	<.001	.001	3	5
CCRCC	MYO9B →	-0.192	-0.049	.002	.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0052646 vs VIRMA — BRCA

Explore this scatter interactively →