Actin filament network formation

Across TCGA patient cohorts, RNA activity of the Actin filament network formation pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CARMIL1, PSMD11, and GGH, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Actin filament network formation activity versus CARMIL1 in OV (Pearson r = 0.37).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	CARMIL1 →	+0.831	+0.912	<.001	<.001	3	6
LSCC	PSMD11 →	-0.533	-0.647	<.001	<.001	3	5
GBM	GGH →	-0.641	-0.702	<.001	.007	3	5
GBM	ITGB1BP2 →	-0.379	-0.751	<.001	<.001	3	5
GBM	ATAD5 →	-0.834	-0.803	<.001	.002	3	5
LSCC	CENPH →	-0.734	-0.730	<.001	.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0051639 vs CARMIL1 — OV

Explore this scatter interactively →