Response to calcium ion

Across TCGA cell cohorts, RNA activity of the Response to calcium ion pathway is significantly associated with the shRNA dependency of multiple genes, with the LIVER cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TLN1, TEAD1, and PPP1R12A, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The box plot shows the strongest association, TLN1 grouped by Response to calcium ion-low versus -high activity in LIVER.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LIVER	TLN1 →	+0.454	+0.085	.007	<.001	3	6
LIVER	TEAD1 →	+0.589	+0.085	.001	<.001	3	6
LIVER	PPP1R12A →	+0.363	+0.086	.002	<.001	3	6
CNS	MYBL2 →	-0.423	-0.096	.006	<.001	3	6
KIDNEY	RAC1 →	+0.361	+0.087	.003	<.001	3	5
BONE	FIGNL2 →	-0.263	-0.135	.004	<.001	2	6

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

TLN1 by Response to calcium ion activity — LIVER

Explore this box plot interactively →