Obsolete histone H3-K4 methylation

pathway activity — cross-omics
GO:0051568Cross-omicsRNA → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete histone H3-K4 methylation pathway is significantly associated with the RNA expression of multiple genes, with the DLBC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TNRC6B, EP300, and PCNX1, each associated with the pathway in up to 34 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
DLBCTNRC6B →+1.012+0.079<.001<.001334
DLBCEP300 →+1.752+0.078<.001<.001334
DLBCPCNX1 →+1.030+0.071<.001<.001334
KICHCHD8 →+0.931+0.059<.001<.001334
UVMPNN →+1.121+0.047<.001<.001334
THYMNFAT5 →+2.249+0.089<.001<.001334
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration