Obsolete histone H3-K4 methylation

pathway activity — cross-omics
GO:0051568Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete histone H3-K4 methylation pathway is significantly associated with the RNA expression of multiple genes, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TMEM97, DSE, and CXorf21, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCTMEM97 →+1.173+0.760<.001<.00136
HNSCDSE →-0.598-0.550<.001.00236
LSCCCXorf21 →-0.512-0.487<.001.00436
GBMPPIH →+0.376+0.647.001.00136
LUADHASPIN →+0.669+0.574<.001.00236
LSCCPRIM1 →+0.538+0.650<.001<.00136
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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