Regulation of cyclic-nucleotide phosphodiesterase activity

pathway activity — cross-omics
GO:0051342Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Regulation of cyclic-nucleotide phosphodiesterase activity pathway is significantly associated with the protein abundance of multiple proteins, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are COL15A1, TPM4, and PALLD_S777, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCCOL15A1 →+0.475+0.043.002.00636
LSCCTPM4 →+0.497+0.078<.001<.00136
CCRCCPALLD_S777 →+0.653+0.029<.001<.00136
LSCCARHGEF17 →+0.204+0.044<.001<.00136
GBMVCL_S721 →+0.480+0.038<.001.00535
LSCCZYX →+0.429+0.073<.001<.00135
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration