Regulation of cyclic-nucleotide phosphodiesterase activity

pathway activity — cross-omics
GO:0051342Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Regulation of cyclic-nucleotide phosphodiesterase activity pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are GIPR, SLC39A14, and ZNF600, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCAGIPR →-0.754-0.143.003.00134
CCRCCSLC39A14 →+0.819+0.246<.001<.00133
CCRCCZNF600 →+0.323+0.195<.001<.00133
COADCPNE2 →+0.426+0.486.003.00233
PDACCFHR5 →-0.022-0.591<.001<.00132
PDACHDC →-0.380-0.383.003.00932
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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