Regulation of ligase activity

pathway activity — cross-omics
GO:0051340Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Regulation of ligase activity pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are NASP, BRIP1, and NCAPD3, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMNASP →+0.594+0.213<.001<.00134
GBMBRIP1 →+1.040+0.235<.001<.00134
GBMNCAPD3 →+0.410+0.134<.001.00234
GBMZNF875 →+0.406+0.193.001<.00125
HNSCEFTUD2 →+0.539+0.160.003.00534
HNSCUBA2 →+0.585+0.194.001<.00133
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration