Regulation of lyase activity

pathway activity — cross-omics
GO:0051339Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Regulation of lyase activity pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are STON2, STMN2, and NDUFA5P11, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMSTON2 →+0.801+0.308.001<.00134
GBMSTMN2 →+1.784+0.297<.001<.00134
BRCANDUFA5P11 →-0.670-0.131.001.00334
GBMCRHBP →+0.924+0.288<.001<.00133
BRCACTNND2 →+1.070+0.199<.001<.00133
CCRCCPTPN2P2 →-0.444-0.214<.001.00233
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration