Positive regulation of sequestering of calcium ion

pathway activity — cross-omics
GO:0051284Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Positive regulation of sequestering of calcium ion pathway is significantly associated with the protein abundance of multiple proteins, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are CLIC2, LGALS9, and PSMB10, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
HNSCCLIC2 →+0.581+0.095<.001<.00136
HNSCLGALS9 →+0.615+0.108<.001<.00136
HNSCPSMB10 →+0.387+0.087<.001.00127
GBMPTPN7 →+0.418+0.047<.001<.00135
PDACSTK4_S414 →+0.505+0.056.002<.00135
GBMTRAF1 →+0.543+0.055<.001<.00135
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration