Sequestering of metal ion

pathway activity — cross-omics
GO:0051238Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Sequestering of metal ion pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are AKAP8L, KDM1A, and RIN3, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMAKAP8L →-0.265-0.065<.001.00137
LSCCKDM1A →-0.342-0.073<.001<.00137
GBMRIN3 →+0.349+0.084<.001<.00137
GBMDAB2 →+0.627+0.087<.001<.00137
OVPRAM1 →+0.852+0.076.002<.00137
LSCCSNX17 →+0.190+0.063<.001<.00137
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration