Regulation of DNA ligation

pathway activity — cross-omics
GO:0051105Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Regulation of DNA ligation pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are GTSE1, AURKB, and NKAPL, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMGTSE1 →+1.123+0.640<.001<.00136
GBMAURKB →+0.657+0.482<.001<.00136
OVNKAPL →-0.291-0.486.001.00235
UCECDPP4 →-1.044-0.113<.001.00235
GBMFYB1 →-1.185-0.746<.001<.00135
LSCCLCMT2 →+0.304+0.137.001<.00135
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration